Package: jarbes 2.2.2

jarbes: Just a Rather Bayesian Evidence Synthesis

Provides a new class of Bayesian meta-analysis models that incorporates a model for internal and external validity bias. In this way, it is possible to combine studies of diverse quality and different types. For example, we can combine the results of randomized control trials (RCTs) with the results of observational studies (OS).

Authors:Pablo Emilio Verde [aut, cre]

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jarbes.pdf |jarbes.html✨
jarbes/json (API)

# Install 'jarbes' in R:
install.packages('jarbes', repos = c('https://bayesstats.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • covid19 - Meta-analysis: Observational studies assessing the impact of risk factors on the severity and mortality of COVID-19 cases
  • healing - Efficacy of diabetic foot healing using adjuvant treatments
  • healingipd - Individual participant data for diabetic patients
  • hips - Meta-analysis:
  • ppvcap - Efficacy of Pneumococcal Polysaccharide Vaccine in Preventing Community Acquired Pneumonia
  • ppvipd - Efficacy of Pneumococcal Polysaccharide Vaccine in Preventing Invasive Pneumococcal Disease
  • stemcells - Meta-analysis of 31 randomized controled trials (RCTs) with reported discrepancies
  • trisomy21 - Meta-analysis: Observational studies assessing the relationship of a positive ICPC (Isolated Choroid Plexus Cyst) on Trisomy 21

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.73 score 1 stars 27 scripts 434 downloads 1 mentions 12 exports 99 dependencies

Last updated 2 months agofrom:dc6a000de9. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 07 2024
R-4.5-winOKNov 07 2024
R-4.5-linuxOKNov 07 2024
R-4.4-winOKNov 07 2024
R-4.4-macOKNov 07 2024
R-4.3-winOKNov 07 2024
R-4.3-macOKNov 07 2024

Exports:b3lmetabcdpmetabcmetabcmixmetabmetadiagnosticdpmetadpmetaregdpmmetaeffecthmrmetarisk

Dependencies:abindaskpassbase64encbookdownbootbslibcachemclicodacolorspacecolourpickercommonmarkcpp11crayoncurldenstripdigestdplyrevaluatefansifarverfastmapfontawesomeforcatsfsgenericsGGallyggExtraggplot2ggstatsgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonlitekableExtraknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmcmcplotsmemoisemgcvmimeminiUImunsellnlmepatchworkpillarpkgconfigplyrprettyunitsprogresspromisespurrrqpdfR2jagsR2WinBUGSR6rappdirsRColorBrewerRcpprjagsrlangrmarkdownrstudioapisassscalessfsmiscshinyshinyjssourcetoolsstringistringrsvglitesyssystemfontstibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxml2xtableyaml

Readme and manuals

Help Manual

Help pageTopics
Bayesian Meta-Analysis for Combining Studiesb3lmeta
Bias Corrected Meta-Analysis with Dirichlet Process Priorsbcdpmeta
Bias-Corrected Meta-Analysis for Combining Studies of Different Types and Qualitybcmeta
Bias Corrected Meta-Analysis with Dirichlet Mixture Process Priors for the biased componentbcmixmeta
Bayesian Meta-Analysis for Combining Studiesbmeta
Meta-analysis: Observational studies assessing the impact of risk factors on the severity and mortality of COVID-19 casescovid19
Generic diagnostic function.diagnostic
Diagnostic function for b3lmeta object in jarbesdiagnostic.b3lmeta
Diagnostic function for bcdpmeta object in jarbesdiagnostic.bcdpmeta
Diagnostic function for bcmeta object in jarbesdiagnostic.bcmeta
Diagnostic function for bcmixmeta object in jarbesdiagnostic.bcmixmeta
Diagnostic function for bmeta object in jarbesdiagnostic.bmeta
Diagnostic function for hmr object in jarbesdiagnostic.hmr
Diagnostic function for metarisk object in jarbesdiagnostic.metarisk
Bayesian Meta-Analysis with Dirichlet Process Priorsdpmeta
Bayesian Meta-Analysis with Dirichlet Process Priorsdpmetareg
Bayesian Meta-Analysis with Dirichlet Process Mixtures Priorsdpmmeta
Generic effect function.effect
Posterior distribution of Effectiveness for a subgroup of patientseffect.hmr
Efficacy of diabetic foot healing using adjuvant treatmentshealing
Individual participant data for diabetic patientshealingipd
Meta-analysis:hips
Bayesian meta-analysis to combine aggregated and individual participant data for cross design synthesis.hmr
Bayesian meta-analysis for using baseline risk adjustmentmetarisk
Generic plot function for bcmeta object in jarbes.plot.b3lmeta
Generic plot function for bcdpmeta object in jarbes.plot.bcdpmeta
Generic plot function for bcmeta object in jarbes.plot.bcmeta
Generic plot function for bmeta object in jarbes.plot.bmeta
Generic plot function for bmeta object in jarbes.plot.dpmeta
Generic plot function for dpmeta object in jarbes.plot.dpmmeta
Generic plot function for hmr object in jarbes.plot.hmr
Generic plot function for metarisk object in jarbes.plot.metarisk
Efficacy of Pneumococcal Polysaccharide Vaccine in Preventing Community Acquired Pneumoniappvcap
Efficacy of Pneumococcal Polysaccharide Vaccine in Preventing Invasive Pneumococcal Diseaseppvipd
Generic print function for bcmeta object in jarbes.print.b3lmeta
Generic print function for bcdpmeta object in jarbes.print.bcdpmeta
Generic print function for bcmeta object in jarbes.print.bcmeta
Generic print function for bcdpmeta object in jarbes.print.bcmixmeta
Generic print function for bcmeta object in jarbes.print.bmeta
Generic print function for dpmeta object in jarbes.print.dpmeta
Generic print function for dpmeta object in jarbes.print.dpmetareg
Generic print function for dpmmeta object in jarbes.print.dpmmeta
Generic print function for hmr object in jarbes.print.hmr
Generic print function for metarisk object in jarbes.print.metarisk
Meta-analysis of 31 randomized controled trials (RCTs) with reported discrepanciesstemcells
Generic summary function for bmeta object in jarbessummary.b3lmeta
Generic summary function for bcdpmeta object in jarbessummary.bcdpmeta
Generic summary function for bcmeta object in jarbessummary.bcmeta
Generic summary function for bmeta object in jarbessummary.bmeta
Generic summary function for dpmmeta object in jarbessummary.dpmeta
Generic summary function for dpmmeta object in jarbessummary.dpmmeta
Generic summary function for hmr object in jarbessummary.hmr
Generic summary function for metarisk object in jarbessummary.metarisk
Meta-analysis: Observational studies assessing the relationship of a positive ICPC (Isolated Choroid Plexus Cyst) on Trisomy 21trisomy21